Based on what your saying is they negate everything thats happened.
No, I'm saying the opposite. You DID see the movie, right? It's pretty clear in the movie that NOTHING was negated and that everything from the main timeline is still perfectly intact. Like I said, this movie follows Dragon Ball Z's laws of time travel, not Back to the Future's. What that means is as follows:
--In Back to the Future, if you went back in time and changed history, the timeline you knew was GONE FOREVER, replaced by a new path. In Back to the Future 2, Biff receives a sports almanac from his future self in 1955, changing history. The 1985 that Marty and Doc knew had disappeared from history, replaced with a completely new 1985 where Biff had power over everybody. If the Star Trek movie followed this law of time travel, then every Trek film and episode you've ever seen no longer "exists", so to speak. But that is NOT the case. Instead:
--In Dragon Ball Z, if you went back in time and changed history, the timeline you knew was NOT gone forever and still perfectly intact, but a new alternate history reflecting your changes would coexist along with it. In DBZ, when Trunks traveled back from the Dead Future to give Goku the heart medication so he (Goku) could destroy the androids that destroyed the world, he DIDN'T negate the dark future he grew up in. When Trunks traveled back to the future, he still ended up in his own post-apocalyptic timeline and had to fight the androids himself. But because of his interference, an alternate non-apocalyptic timeline was ALSO created where Goku fought Cell, Majin Buu, and searched for the Black Star Dragon Balls (in other words, where the main series continued to take place). Neither timeline negated, erased, or overwrote the other; rather they BOTH exist. THIS same principle is present in the Star Trek movie. BOTH the main series we all grew up with AND this movie exist together, side-by-side (along with the Mirror Universe, of course).
So nothing has been negated. The main series timeline still exists, intact and untouched. Nothing has been rebooted, reloaded, reentered, reimagined, rewound, etc. Not only is this NOT a prequel, but this is closer to a SEQUEL. The story REALLY begins AFTER Nemesis and the franchise will likely continue from there. Any other stories taking place in the Chris Pine/Zachary Quinto universe are no different and have no more bearing on the franchise than stories taking place in the Mirror Universe. So unless you think Spock with a beard destroyed the Trek franchise, just chill out. Everything's fine.
Cool?